PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01276.120
Common NameJCGZ_26298, LOC105648652
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 223aa    MW: 24760.4 Da    PI: 6.3668
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01276.120genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.1e-18105155255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdps   k  r++lg+f+t  +Aaka++ a+ +++g
  Jcr4S01276.120 105 HYRGVRRRP-WGKFAAEIRDPSR--KGSRVWLGTFDTDIDAAKAYDCAAFRMRG 155
                     8********.**********854..34*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.57E-28104163No hitNo description
Gene3DG3DSA:3.30.730.101.1E-31104164IPR001471AP2/ERF domain
SMARTSM003805.4E-35105169IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-22105164IPR016177DNA-binding domain
PfamPF008471.9E-13105155IPR001471AP2/ERF domain
PROSITE profilePS5103224.342105163IPR001471AP2/ERF domain
PRINTSPR003675.0E-13106117IPR001471AP2/ERF domain
PRINTSPR003675.0E-13145165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MATPQESSAL ELIRQHLLGD FTSTDVFISN LDSHISSLVH NLQPVKLETQ DESLSGSESN  60
SSVSDSFQYT HEFVDLKSQE YSGSGSVKRS STPKAKPADD DEKKHYRGVR RRPWGKFAAE  120
IRDPSRKGSR VWLGTFDTDI DAAKAYDCAA FRMRGRKAIL NFPLEAGRAD PPANTGRKRR  180
RVKREDVPPE SGDLSPVSWD SGCVGGEGEG VFFYEEQPSP LFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-29104164464ATERF1
3gcc_A3e-29104164464ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176180RKRRR
2176183RKRRRVKR
3177181KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090504.11e-165PREDICTED: ethylene-responsive transcription factor ERF106
TrEMBLA0A067JF461e-165A0A067JF46_JATCU; Uncharacterized protein
STRINGPOPTR_0003s15060.12e-78(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.16e-47ERF family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]